John is trapped on Atlantis which is being rebooted and has sunk again. He is sick and the city has to make him eat and take care of himself through most of the super flu. He contacts Rodney and the others with glowsticks by spelling out words. He is trapped there for a few months slowing starving to death, freezing because there is no heat. He sets up camp in Weirs office I think. The Trust caused this to happen because they had read that if he was on Atlants when it rebooted then he would be linked to Atlantis. Atlantis shoots Rodneys jumper down and John forces the city to rescue him before he can drown. I have been searching for a few days and can't find it anywhere, hope someone else remembers the name of it.
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